Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31989

Metabolite ID
P31989
Deionized mass
468.7380 Da
Average m/z
469.7407
Average RT
16.5055
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.319e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.684e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.954e-13
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)2.129e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.062e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.51e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.317e-12
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)1.102e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)1.202e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.2e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.278e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.188e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.442e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.234e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.471e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.457e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.457e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)5.045e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.247e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.379e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.247e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.247e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.38e-12
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)3.989e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)3.989e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)3.989e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)3.989e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)3.989e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)3.989e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)3.989e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)3.989e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)3.989e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)3.989e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)3.989e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)3.989e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)3.989e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.246e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.954e-13
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)2.129e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.895e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.895e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.122e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.122e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.269e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.889e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.269e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.269e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.939e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.96e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)8.774e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.709e-14
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)9.942e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.168e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.684e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.684e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.065e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.163e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.229e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)7.015e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)7.015e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)5.475e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)9.348e-11