Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31780

Metabolite ID
P31780
Deionized mass
514.2198 Da
Average m/z
515.2253
Average RT
16.4396
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.984e-11
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)3.343e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.653e-14
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)2.732e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.438e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)7.552e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)5.172e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.154e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.397e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.397e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.269e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)7.995e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.984e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.609e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.609e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)6.316e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.685e-15
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)8.326e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)9.845e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)9.845e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)9.845e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)9.845e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)9.845e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.913e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.151e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.864e-13
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)8.134e-12
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)8.134e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)7.423e-13
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)5.197e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.502e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.653e-15
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.438e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.555e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.895e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.895e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.176e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.228e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.228e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.228e-13
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)7.712e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.564e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.564e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.564e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.564e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.324e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.712e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.705e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.884e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.884e-13
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.814e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.814e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.814e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.814e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.814e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.814e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.814e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.814e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.814e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.814e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)7.145e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)7.145e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)7.145e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.557e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.557e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.557e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.068e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.068e-12
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)8.703e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.32e-12
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)2.145e-11
Glyma.10G055100 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr10:5015329–5032990 (+)1.888e-11
Glyma.10G186500 PT7 NA 1Chr10:41946209–41950274 (-)6.147e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.363e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.363e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.527e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.527e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.069e-12
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)6.545e-11
Glyma.12G186300 hypothetical protein NA 1Chr12:34717587–34719271 (+)9.528e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.593e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.417e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.154e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.843e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.608e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)9.476e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)5.055e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)3.527e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)3.527e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)3.527e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.728e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.653e-14
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)5.431e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.397e-16
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.397e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6e-16
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)5.669e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)5.685e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.037e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.858e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.434e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.858e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.858e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.325e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.462e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.985e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.509e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.295e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.338e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.632e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.632e-13
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)8.586e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)8.586e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)5.849e-11