Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31508

Metabolite ID
P31508
Deionized mass
299.0902 Da
Average m/z
300.0966
Average RT
16.3650
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.803e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.905e-11
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.859e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.924e-13
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)3.803e-17
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.814e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.905e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)1.07e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.622e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)5.362e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)7.142e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.574e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.719e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.803e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.803e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.803e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.803e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.7e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.968e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.106e-14
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)6.995e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)6.995e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.594e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.031e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.863e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)3.009e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.92e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.92e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.92e-13
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)4.624e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.524e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.445e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.445e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.098e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.192e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.138e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.924e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.582e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.178e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.13e-14
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.166e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.806e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.066e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.419e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.044e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.044e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.044e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.744e-15
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)2.814e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.097e-16
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.227e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.862e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.85e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.041e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)8.393e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.016e-13
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)9.233e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.262e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)3.123e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.972e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.972e-12
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)1.462e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)9.88e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.711e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.31e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.238e-11
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)4.172e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.826e-11