Overview Annotation GWAS Evidence Associated genes

P31493

Metabolite ID
P31493
Deionized mass
402.1832 Da
Average m/z
403.1902
Average RT
16.3603
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
146
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

146 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)7.49e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.635e-11
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)4.323e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.967e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.011e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.809e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.456e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.741e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.214e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.623e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.119e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.516e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.639e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.928e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.634e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.957e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.908e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.908e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.908e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.908e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.908e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.908e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.908e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.239e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.239e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.843e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)3.074e-12
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)9.029e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.381e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.82e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.977e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.904e-17
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.078e-12
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)7.677e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)5.772e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.688e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)4.323e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.636e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.363e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.626e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.652e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.652e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.652e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)5.198e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.198e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.781e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.596e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.382e-17
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.378e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.378e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.378e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.379e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.379e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.112e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.176e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)5.98e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)4.303e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.66e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)5.073e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.112e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.782e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.264e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.771e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)5.25e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.25e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)6.56e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.216e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.809e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.809e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.809e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.809e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.304e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.139e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.686e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.232e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.647e-15
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)3.644e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)6.638e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.032e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.032e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.032e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.032e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.229e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.843e-14
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)9.668e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.575e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.508e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.509e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.509e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)3.425e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)9.991e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)6.321e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.934e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.995e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.995e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.27e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.276e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.276e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.859e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.31e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.505e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.505e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.327e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.679e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.704e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.681e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.334e-16
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.724e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.179e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.456e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.988e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.546e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.988e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.988e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.816e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.192e-14
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)7.58e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.978e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.816e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.517e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.295e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.245e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.612e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.318e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)2.902e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)4.087e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.535e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.674e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.175e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.175e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.615e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.615e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.879e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.635e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)3.96e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.081e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)9.561e-14
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.635e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.473e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.623e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)7.64e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.543e-19
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.543e-19
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.827e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.032e-13
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)8.591e-14