Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31474

Metabolite ID
P31474
Deionized mass
959.5138 Da
Average m/z
960.5203
Average RT
16.3543
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.904e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)4.147e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.692e-12
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)4.677e-12
Glyma.16G180100 hypothetical protein NA 2Chr16:34070806–34076053 (+)6.786e-15
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.817e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)9.37e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.218e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.886e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.856e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.101e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.835e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.276e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.366e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.366e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.457e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.72e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.72e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.72e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.904e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.904e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.597e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.96e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)9.121e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.552e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.787e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.787e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.787e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.787e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.793e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.793e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.112e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.147e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.979e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.692e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.857e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.338e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.857e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.857e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.046e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.02e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)6.792e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.311e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.786e-15
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.703e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.817e-12
Glyma.18G026200 hypothetical protein AT2G40150:TBL28:TRICHOME BIREFRINGENCE-LIKE 28__AT3G55990:ESK1:trichome birefringence-like protein (DUF828) 1Chr18:1953183–1957001 (-)7.589e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.68e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.68e-14
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)8.41e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.766e-12