Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30940

Metabolite ID
P30940
Deionized mass
441.2542 Da
Average m/z
442.2584
Average RT
16.1738
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
69
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

69 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.044e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.61e-12
Glyma.18G267500 hypothetical protein NA 3Chr18:55179516–55181798 (-)2.922e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr03:1683395–1688893 (-)1.681e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)5.716e-13
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)2.263e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.889e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 2Chr18:55076548–55086297 (+)3.45e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)1.57e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.921e-11
Glyma.03G148900 hypothetical protein NA 1Chr03:36449311–36451278 (+)1.11e-12
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)3.361e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.216e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.089e-11
Glyma.05G004600 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr05:398853–402990 (-)2.077e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.867e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.766e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.512e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.578e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.578e-12
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)4.608e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)6.337e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)6.337e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.37e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.383e-12
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)4.492e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)7.982e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)7.322e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)2.45e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)2.45e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)7.635e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)7.635e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.453e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.453e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.903e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.562e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.562e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.32e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.619e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.619e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.619e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.619e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.263e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)6.818e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.233e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.233e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.466e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)7.642e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.017e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.299e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.299e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.213e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.158e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.587e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.038e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.61e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.61e-12
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)1.714e-13
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)9.946e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.515e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.281e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.177e-14
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.179e-14
Glyma.18G299700 hypothetical protein AT2G43180:AT2G43180:Phosphoenolpyruvate carboxylase family protein 1Chr18:57755837–57757150 (-)2.072e-14
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.319e-14
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.061e-15
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.594e-11
Glyma.20G198400 hypothetical protein NA 1Chr20:43601702–43633244 (+)7.213e-11
Glyma.20G198600 hypothetical protein AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 1Chr20:43634710–43639892 (-)7.213e-11