Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30744

Metabolite ID
P30744
Deionized mass
405.2011 Da
Average m/z
406.2077
Average RT
16.1198
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.291e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.593e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.197e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.569e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)1.013e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 2Chr05:41274513–41279615 (-)9.775e-37
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)3.974e-11
Glyma.09G057000 hypothetical protein NA 2Chr09:5140625–5145658 (+)6.372e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.055e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.731e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.617e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.593e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)3.757e-13
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.632e-13
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)2.324e-12
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)6.602e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)7.344e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.916e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.36e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.748e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.37e-18
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.062e-11
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)2.718e-13
Glyma.04G190900 hypothetical protein AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 1Chr04:46152356–46155245 (-)3.86e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.869e-14
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.344e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.304e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.297e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.958e-12
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)1.591e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.003e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.218e-19
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.253e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.98e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.67e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.817e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.459e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.158e-15
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)3.447e-12
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)3.447e-12
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)3.447e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.267e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.515e-15
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)1.718e-13
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)5.044e-14
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)5.332e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)5.083e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.46e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.449e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.027e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.199e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.199e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.198e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.198e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.376e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.948e-13
Glyma.10G233200 hypothetical protein NA 1Chr10:46244187–46249491 (-)2.886e-11
Glyma.10G233700 hypothetical protein AT3G49050:AT3G49050:alpha/beta-Hydrolases superfamily protein 1Chr10:46285252–46289700 (-)2.886e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.036e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)7.19e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.642e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.134e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.134e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.134e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.134e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)5.393e-12
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.263e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.619e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.619e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.104e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.104e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.866e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.991e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.731e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.052e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.46e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.371e-15
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.197e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.269e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.267e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.267e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.267e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.267e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.585e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)9.415e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.156e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)2.845e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.409e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.409e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.039e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.291e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.978e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.569e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.569e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.569e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.569e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.849e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.469e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.434e-13
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.809e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.276e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.267e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.889e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.35e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.35e-12
Glyma.18G044400 hypothetical protein AT3G03250:UGP1:UDP-GLUCOSE PYROPHOSPHORYLASE 1 1Chr18:3836270–3837813 (+)4.208e-11
Glyma.18G044600 hypothetical protein AT4G10710:SPT16:global transcription factor C 1Chr18:3846050–3851668 (+)4.85e-12
Glyma.18G044700 hypothetical protein NA 1Chr18:3846777–3847566 (+)4.85e-12
Glyma.18G044800 hypothetical protein NA 1Chr18:3854125–3856926 (+)4.85e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.493e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.758e-13
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)2.734e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.355e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.502e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.502e-11
Glyma.19G137700 hypothetical protein NA 1Chr19:39904075–39916887 (+)8.313e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)5.495e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.89e-15
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.576e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.574e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.462e-15