Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30709

Metabolite ID
P30709
Deionized mass
937.4701 Da
Average m/z
938.4796
Average RT
16.1095
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.611e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)2.699e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.283e-12
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)6.796e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.435e-13
Glyma.18G240600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 2Chr18:52922157–52933250 (-)6.443e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.558e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)4.618e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)6.796e-12
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)6.796e-12
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)6.796e-12
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)6.796e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.611e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.827e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.482e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.611e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.611e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.462e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.917e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)9.518e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.093e-12
Glyma.10G259900 hypothetical protein AT2G18990:TXND9:thioredoxin-like/ATP-binding protein__AT3G25580:AT3G25580:Thioredoxin superfamily protein 1Chr10:48563415–48566192 (+)1.583e-11
Glyma.10G261100 hypothetical protein NA 1Chr10:48628245–48635184 (+)8.853e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.241e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.85e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.723e-12
Glyma.12G055100 hypothetical protein AT5G12900:AT5G12900:DNA double-strand break repair RAD50 ATPase 1Chr12:3988442–3991287 (-)8.254e-14
Glyma.12G059300 hypothetical protein NA 1Chr12:4289989–4292215 (-)4.327e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.583e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.583e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.616e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.019e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.274e-12
Glyma.14G097400 hypothetical protein AT5G11960:AT5G11960:magnesium transporter, putative (DUF803) 1Chr14:9185419–9190929 (-)9.234e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.435e-13
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)4.144e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)4.144e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.286e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)9.819e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)9.819e-11
Glyma.16G205000 hypothetical protein AT5G62280:AT5G62280:DUF1442 family protein (DUF1442) 1Chr16:36598140–36599460 (+)1.596e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)5.641e-11
Glyma.18G240400 hypothetical protein AT3G54900:CXIP1:CAX interacting protein 1 1Chr18:52914082–52916967 (-)8.535e-12
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)2.598e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.66e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.986e-12
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)9.38e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.921e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.921e-12
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)8.643e-11