Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30689

Metabolite ID
P30689
Deionized mass
752.3613 Da
Average m/z
753.3640
Average RT
16.1042
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.342e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.026e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.118e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 2Chr05:2965889–2971412 (-)3.785e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)6.084e-12
Glyma.10G253000 hypothetical protein AT4G11530:CRK34:cysteine-rich RLK (RECEPTOR-like protein kinase) 34__AT4G23140:CRK6:cysteine-rich RLK (RECEPTOR-like pr… 2Chr10:48068741–48072310 (+)1.741e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.551e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.055e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.507e-14
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)7.729e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.795e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)8.116e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.454e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.692e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.692e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.892e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.31e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.223e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.906e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)7.433e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.178e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.178e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.332e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.163e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.91e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.803e-11
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)5.626e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.287e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.287e-11
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)5.308e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.597e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.744e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.063e-14
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)9.416e-15
Glyma.08G118900 hypothetical protein NA 1Chr08:9180535–9184036 (+)9.03e-14
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.978e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.978e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.727e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.425e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.968e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.18e-12
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)1.601e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.172e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.172e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.172e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.62e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.183e-11
Glyma.10G252900 hypothetical protein NA 1Chr10:48060421–48062561 (+)1.741e-11
Glyma.10G253200 hypothetical protein NA 1Chr10:48082774–48087693 (+)1.741e-11
Glyma.10G253300 hypothetical protein NA 1Chr10:48087019–48104787 (-)1.741e-11
Glyma.10G253400 hypothetical protein NA 1Chr10:48108784–48110803 (+)1.741e-11
Glyma.10G253700 hypothetical protein NA 1Chr10:48115282–48116633 (+)8.483e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.807e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.807e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.988e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.551e-16
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)4.029e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.583e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.159e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.159e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.272e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.026e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.595e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.393e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.576e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)4.866e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)8.143e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.274e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.522e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.369e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.369e-12
Glyma.17G236600 hypothetical protein NA 1Chr17:39177181–39187191 (+)3.545e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.764e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.509e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.509e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.089e-14