Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30563

Metabolite ID
P30563
Deionized mass
684.2506 Da
Average m/z
685.2608
Average RT
16.0732
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)5.363e-14
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 4Chr18:8991445–9001857 (-)3.678e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.704e-12
Glyma.19G130800 hypothetical protein NA 3Chr19:39069648–39108791 (+)8.073e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.561e-11
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)6.218e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.688e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.681e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.121e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.293e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.464e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.887e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.887e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.887e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.48e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.111e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.895e-11
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)9.436e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.948e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.948e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.791e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.059e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.183e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)5.935e-11
Glyma.09G004900 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr09:397361–398713 (-)8.84e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.298e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.442e-13
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.248e-12
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.108e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.499e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.499e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.499e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.882e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.093e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.093e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.578e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.578e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.363e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.959e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.267e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.561e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.305e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.305e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.305e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)2.309e-11
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)2.309e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.555e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.214e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.838e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.714e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)7.265e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.704e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.82e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.82e-14
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)8.9e-12
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)8.9e-12
Glyma.17G039200 hypothetical protein NA 1Chr17:2903795–2919460 (+)7.698e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)4.358e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.919e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.919e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.21e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)3.678e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.544e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.076e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.486e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.018e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.517e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.179e-11