Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30427

Metabolite ID
P30427
Deionized mass
106.0769 Da
Average m/z
107.0847
Average RT
16.0340
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.299e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)1.56e-13
Glyma.06G312600 hypothetical protein NA 3Chr06:50110112–50120250 (+)2.542e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.61e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.484e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.018e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)2.421e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.738e-12
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)1.735e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.299e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.745e-12
Glyma.03G000100 hypothetical protein AT5G08400:AT5G08400:structural maintenance of chromosomes-like protein, putative (DUF3531) 1Chr03:9547–29036 (-)3.011e-11
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)4.504e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.414e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.456e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.853e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.284e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.284e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.284e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.235e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.235e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.203e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.182e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.203e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.203e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.182e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)3.825e-12
Glyma.08G299500 hypothetical protein AT3G05290:PNC1:peroxisomal adenine nucleotide carrier 1 1Chr08:41767501–41769958 (-)9.06e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.001e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.905e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.895e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.018e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.204e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.204e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.204e-12
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.431e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.247e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.081e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.054e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.053e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.603e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.348e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.494e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.937e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.212e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.892e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.451e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.981e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.981e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)7.486e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)7.487e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.738e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.502e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.738e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)6.14e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)6.14e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)2.511e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.246e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.246e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.131e-11