Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30413

Metabolite ID
P30413
Deionized mass
288.0612 Da
Average m/z
289.0713
Average RT
16.0304
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 3Chr09:5571201–5579976 (-)1.088e-16
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.263e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)2.905e-14
Glyma.09G060000 hypothetical protein NA 2Chr09:5548206–5554279 (-)3.003e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.062e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.4e-13
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)4.119e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)4.653e-11
Glyma.02G290800 hypothetical protein AT5G07470:PMSR3:peptidemethionine sulfoxide reductase 3 1Chr02:47032515–47036279 (-)1.097e-11
Glyma.02G291200 hypothetical protein NA 1Chr02:47062620–47065072 (-)1.097e-11
Glyma.02G292200 hypothetical protein AT3G20475:MSH5:MUTS-homologue 5 1Chr02:47125531–47139234 (-)8.467e-13
Glyma.02G292500 hypothetical protein AT5G55070:AT5G55070:Dihydrolipoamide succinyltransferase 1Chr02:47153091–47160573 (+)8.467e-13
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)1.276e-15
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)2.706e-14
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)4.077e-15
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)1.663e-14
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)1.457e-15
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)1.457e-15
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.735e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.905e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.783e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.047e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.047e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.047e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.576e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.793e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.76e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.534e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.187e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.187e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.187e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.994e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.994e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.216e-12
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)7.311e-13
Glyma.06G206700 Flavonol 3-O-glucosyltransferase UGT89B1 AT1G73880:UGT89B1:UDP-glucosyl transferase 89B1 1Chr06:19913261–19914912 (+)2.695e-12
Glyma.06G208200 hypothetical protein NA 1Chr06:20310840–20315335 (-)2.695e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.717e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.717e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.43e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.692e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.625e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)7.307e-13
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)7.307e-13
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 1Chr09:5561072–5570789 (+)3.003e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)1.284e-14
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.479e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)5.801e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.846e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)1.756e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.799e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)4.433e-13
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.391e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.391e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.843e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.691e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.98e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.04e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.636e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.002e-11
Glyma.16G164300 hypothetical protein NA 1Chr16:32316376–32319476 (-)8.783e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)4.287e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)1.302e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)9.044e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.54e-11