Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30343

Metabolite ID
P30343
Deionized mass
499.2310 Da
Average m/z
500.2372
Average RT
16.0083
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)2.884e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.081e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.008e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)3.652e-11
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)2.161e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)2.045e-14
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.998e-16
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)8.34e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.726e-17
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.743e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.585e-11
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)6.469e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.742e-11
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)3.399e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.861e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.081e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.081e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.127e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)1.717e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)6.679e-13
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)6.679e-13
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.288e-11
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)5.382e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.288e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)2.603e-11
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)4.231e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)3.81e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)9.533e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.902e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.062e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.097e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.598e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.097e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.097e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.099e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.899e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.587e-14
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)5.482e-11
Glyma.16G144400 hypothetical protein NA 1Chr16:30478942–30480766 (+)5.776e-12
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.265e-11
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)3.539e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)5.796e-11
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)3.775e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)9.959e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.998e-16
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.34e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.165e-16
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)2.29e-16
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)6.006e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)7.08e-11