Overview Annotation GWAS Evidence Associated genes

P30204

Metabolite ID
P30204
Deionized mass
1174.5741 Da
Average m/z
1175.5812
Average RT
15.9719
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
161
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

161 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)9.782e-14
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.625e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.905e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.193e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.173e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.038e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.281e-13
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)3.25e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)2.893e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.494e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.107e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.107e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.107e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.744e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.524e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.997e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.997e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.035e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.174e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)6.307e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)9.078e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.089e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.073e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.905e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.201e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.501e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.501e-12
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)4.112e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.698e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.364e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.166e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)4.125e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)5.465e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.212e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.516e-16
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.086e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)9.817e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.016e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.444e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.077e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.077e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.311e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.979e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.979e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.979e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.431e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.434e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.566e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.353e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.086e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.474e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.603e-19
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.602e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.621e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.621e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.789e-13
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.98e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.439e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)9.785e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.193e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.215e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.16e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.372e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)7.692e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.129e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)5.195e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.32e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.29e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.494e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.494e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.494e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.494e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)4.479e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)4.979e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.438e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)6.533e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.292e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.769e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.609e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.63e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.357e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.107e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.107e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.107e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.107e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.107e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.967e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.916e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.435e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.252e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.252e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.252e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.252e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.84e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.191e-13
Glyma.11G110100 hypothetical protein AT2G16510:AT2G16510:ATPase, F0/V0 complex, subunit C protein 1Chr11:8397135–8398949 (-)6.841e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.624e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.624e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.04e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.04e-15
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.723e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.158e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.158e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.979e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.604e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.604e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.524e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.39e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.39e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.997e-14
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.951e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.384e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.159e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.174e-12
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)6.081e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)6.082e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)9.67e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.154e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.417e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.154e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.154e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.329e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.478e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.947e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.802e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.745e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.054e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.782e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.274e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.877e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.07e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.705e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.159e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.559e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.557e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.977e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.115e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.937e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)9.699e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.928e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.281e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.873e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.038e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.367e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.367e-13
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.587e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.84e-15
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.089e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.281e-13
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)4.287e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)8.806e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.209e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.92e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.2e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)7.004e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.494e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.928e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.928e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.543e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.611e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.346e-11