Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30053

Metabolite ID
P30053
Deionized mass
156.1500 Da
Average m/z
157.1578
Average RT
15.9296
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
27
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

27 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.734e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.866e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.389e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.932e-14
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.066e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.066e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.066e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.342e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.717e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.519e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.004e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.734e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.734e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.432e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.395e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.602e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.583e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.764e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.593e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.593e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.866e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.848e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.058e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.389e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.882e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.882e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.73e-11