Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29992

Metabolite ID
P29992
Deionized mass
320.0566 Da
Average m/z
321.0627
Average RT
15.9178
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.799e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)7.444e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.839e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)7.958e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.467e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.467e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.589e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.699e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.36e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)6.778e-13
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)3.281e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.502e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.858e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.257e-13
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)9.888e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.799e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.799e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.354e-14
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.566e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.904e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.258e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.545e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.622e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)5.183e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)2.675e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.805e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)5.496e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.333e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.019e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.019e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.034e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.757e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.27e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.654e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.654e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)9.553e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.369e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.141e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.777e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.321e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.306e-15