Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29880

Metabolite ID
P29880
Deionized mass
1148.5482 Da
Average m/z
1149.5532
Average RT
15.8959
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 3Chr18:55076548–55086297 (+)1.469e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)1.93e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.54e-11
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)9.978e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.328e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.87e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)7.419e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.34e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.852e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.492e-13
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)1.418e-12
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)1.418e-12
Glyma.03G154000 hypothetical protein NA 1Chr03:36898114–36903520 (-)1.798e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.263e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.858e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.858e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.858e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.473e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.483e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.41e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.444e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.035e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.12e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.12e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.661e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.661e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.237e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.462e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.977e-11
Glyma.11G163300 WRKY19 WRKY transcription factor 19 NA 1Chr11:15312631–15316628 (+)1.467e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.211e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.211e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.698e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.698e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.476e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.355e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.375e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.592e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.592e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.058e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.556e-15
Glyma.14G087700 hypothetical protein NA 1Chr14:7856127–7866458 (-)5.066e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.364e-11
Glyma.15G262100 hypothetical protein AT1G79550:PGK:phosphoglycerate kinase 1Chr15:49447943–49451741 (+)8.516e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.604e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.698e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.506e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.077e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.076e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.077e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.532e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.532e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.554e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)2.67e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)7.476e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.963e-11