Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29790

Metabolite ID
P29790
Deionized mass
522.2297 Da
Average m/z
523.2356
Average RT
15.8664
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)2.268e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.012e-11
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)2.571e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.088e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.254e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.254e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)2.721e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.42e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.337e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.928e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.078e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.078e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.078e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.321e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.347e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.347e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.347e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.347e-11
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)8.193e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.492e-11
Glyma.08G123500 hypothetical protein NA 1Chr08:9494946–9505931 (-)7.937e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.205e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.668e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.403e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.403e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.673e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.673e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.997e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.078e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.078e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.078e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.078e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.874e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.034e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.923e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.264e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.264e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.178e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.047e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.178e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.178e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.227e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.84e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.371e-11
Glyma.19G005800 Polyribonucleotide nucleotidyltransferase 2, mitochondrial AT5G14580:AT5G14580:polyribonucleotide nucleotidyltransferase 1Chr19:522587–531382 (-)4.265e-11