Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29783

Metabolite ID
P29783
Deionized mass
589.2398 Da
Average m/z
590.2460
Average RT
15.8651
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
138
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

138 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.151e-13
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.095e-13
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.864e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.005e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.699e-13
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)2.095e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.806e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.062e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.558e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.047e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.355e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.151e-13
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)1.467e-11
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)3.926e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)6.321e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.765e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.206e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.151e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.151e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.171e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.084e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.39e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.286e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.552e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.92e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.5e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.886e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.103e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)8.248e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.354e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.799e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.799e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.799e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.806e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.027e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.073e-16
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.288e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.836e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.836e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.836e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.223e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.223e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.316e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.194e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.017e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.48e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.482e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)9.747e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)2.221e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.715e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.582e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.209e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.795e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.186e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.359e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.915e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.198e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.402e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.402e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.402e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.402e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.435e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.63e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.438e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.328e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.328e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.328e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.328e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.946e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.259e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.259e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.259e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.882e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)7.133e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)4.988e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)4.084e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.08e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.34e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.34e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.097e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.097e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.701e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.005e-13
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)9.662e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.714e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.714e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.714e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.714e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.129e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.367e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.366e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.366e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.38e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.264e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.264e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.929e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.262e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.929e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.929e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.064e-14
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.356e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.326e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.437e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.737e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.919e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.358e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.056e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.104e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.068e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.634e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.877e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.545e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.545e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.855e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.763e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.238e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.254e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.999e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.999e-12
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)7.058e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)7.058e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)7.058e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.656e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)1.331e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)1.331e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.355e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.162e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.355e-13
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.22e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.603e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.731e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.598e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.175e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.896e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.896e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)6.05e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.211e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)5.875e-12