Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29628

Metabolite ID
P29628
Deionized mass
527.2164 Da
Average m/z
528.2200
Average RT
15.8306
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)7.253e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.329e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.5e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.467e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.675e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.242e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.212e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.809e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.898e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)4.774e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.014e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.07e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.383e-12
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)8.729e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)1.034e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)1.034e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.65e-11
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)9.138e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.65e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)5.38e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.752e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)2.338e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)9.749e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)4.107e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.253e-12
Glyma.08G188200 hypothetical protein AT1G22940:TH1:thiamine biosynthesis protein 1Chr08:15098368–15103757 (+)4.66e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.302e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)2.915e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.718e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.501e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.642e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.019e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.642e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.642e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.909e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.467e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.06e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)9.429e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.648e-11
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)1.924e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.774e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.432e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.141e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.432e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.242e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.782e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.745e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)3.148e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.598e-14
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.475e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)3.58e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)1.144e-11