Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29482

Metabolite ID
P29482
Deionized mass
734.2146 Da
Average m/z
735.2158
Average RT
15.8038
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.425e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.976e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.139e-11
Glyma.19G130800 hypothetical protein NA 3Chr19:39069648–39108791 (+)1.412e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)8.369e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.884e-13
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)9.277e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)8.181e-12
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)8.181e-12
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)8.181e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.653e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)8.371e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.375e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.401e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.347e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.189e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.213e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.082e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.703e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.987e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.052e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)6.8e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.976e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.976e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.304e-11
Glyma.06G319500 hypothetical protein NA 1Chr06:50828930–50845232 (-)4.271e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.94e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.94e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.42e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)1.032e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)3.796e-16
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)2.92e-13
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)1.411e-11
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)1.411e-11
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)1.411e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.058e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.511e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.351e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.996e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.764e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.764e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.764e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.764e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.686e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.686e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.648e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.809e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.809e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.707e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.337e-11
Glyma.13G318900 hypothetical protein AT2G27810:NAT12:nucleobase-ascorbate transporter 12 1Chr13:41337944–41344534 (+)6.975e-13
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)1.146e-12
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)2.221e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.933e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)2.424e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)2.424e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.759e-13
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)5.789e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)1.359e-12
Glyma.15G108400 hypothetical protein AT1G11840:GLX1:glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1Chr15:8534420–8539477 (-)1.005e-11
Glyma.15G108500 hypothetical protein NA 1Chr15:8535758–8538465 (+)1.005e-11
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)5.949e-13
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)2.656e-12
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)2.656e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.391e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.578e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.517e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.736e-11
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)1.128e-11
Glyma.17G008600 hypothetical protein AT4G22360:AT4G22360:SWIB complex BAF60b domain-containing protein 1Chr17:711744–716737 (-)8.234e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)8.812e-13
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)6.229e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.483e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.139e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.648e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.648e-13
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)6.217e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.534e-11