Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29257

Metabolite ID
P29257
Deionized mass
240.1363 Da
Average m/z
241.1427
Average RT
15.7401
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
136
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

136 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.353e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.387e-15
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)2.159e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)6.042e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)1.116e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.054e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.713e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.263e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.443e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)8.199e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.559e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)7.787e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.965e-11
Glyma.18G267500 hypothetical protein NA 2Chr18:55179516–55181798 (-)1.634e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.353e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.115e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.15e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)6.042e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.671e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.4e-11
Glyma.02G125400 hypothetical protein AT1G68910:WIT2:WPP domain-interacting protein 2 1Chr02:12529368–12536281 (+)9.131e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)9.646e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.267e-15
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)7.979e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)4.48e-14
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)5.097e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)2.156e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.512e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.793e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.378e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.886e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.886e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.886e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.407e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.495e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.447e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.326e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.997e-17
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.456e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.456e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.456e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.956e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.626e-11
Glyma.06G313600 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr06:50219160–50226659 (-)3.516e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.125e-11
Glyma.06G319500 hypothetical protein NA 1Chr06:50828930–50845232 (-)1.732e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)8.866e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)8.866e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)3.053e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.908e-12
Glyma.08G094400 hypothetical protein AT1G18390:AT1G18390:Serine/Threonine kinase family catalytic domain protein 1Chr08:7174551–7178950 (-)5.295e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)9.112e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.713e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.713e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.714e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.713e-11
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.345e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.605e-12
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)5.327e-12
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)5.327e-12
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)5.327e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)8.667e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.412e-11
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)4.847e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.546e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.899e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.715e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.715e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.715e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.715e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.167e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.407e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.361e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.104e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.888e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.888e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.888e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.888e-11
Glyma.11G108500 hypothetical protein NA 1Chr11:8276454–8280498 (-)2.48e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.662e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.662e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.662e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)8.016e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.284e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.284e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.866e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.866e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.263e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.702e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.025e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.073e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)3.282e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.052e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.052e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.052e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.051e-11
Glyma.13G277400 hypothetical protein NA 1Chr13:37872791–37879361 (+)1.732e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)9.316e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.623e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.912e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.558e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.099e-11
Glyma.16G105300 hypothetical protein AT4G19120:ERD3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:21299154–21305321 (-)2.859e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.161e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.012e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.008e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)6.36e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.618e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)4.277e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.141e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.141e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.237e-11
Glyma.16G160200 hypothetical protein NA 1Chr16:31969869–31972840 (+)6.011e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.606e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.381e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.46e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)7.844e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.919e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.198e-11
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)5.07e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.47e-11
Glyma.17G218000 hypothetical protein AT4G31890:AT4G31890:ARM repeat superfamily protein 1Chr17:36783362–36786891 (+)2.448e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)3.038e-13
Glyma.17G218500 hypothetical protein NA 1Chr17:36908440–36910940 (-)2.448e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.429e-14
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.681e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.493e-12
Glyma.18G267200 hypothetical protein NA 1Chr18:55161119–55166101 (-)1.654e-11
Glyma.18G267300 hypothetical protein NA 1Chr18:55166980–55168397 (+)8.686e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.049e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.049e-17
Glyma.19G027200 hypothetical protein AT5G15400:AT5G15400:U-box domain-containing protein 1Chr19:3392784–3401129 (-)8.586e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.884e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.168e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)5.538e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.491e-13