Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28988

Metabolite ID
P28988
Deionized mass
543.2718 Da
Average m/z
544.2774
Average RT
15.6547
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)3.025e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.261e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.69e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 2Chr07:6307073–6313498 (-)3.505e-12
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 2Chr07:6364435–6372387 (-)5.555e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.76e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.869e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.261e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.215e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.218e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.898e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.789e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.612e-12
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)6.342e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.002e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)5.735e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.187e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.577e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.918e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.779e-11
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)2.852e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.769e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.808e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.132e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)8.258e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.89e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.16e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.715e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.41e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.523e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.874e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.874e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.432e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.432e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.33e-11
Glyma.19G011000 hypothetical protein NA 1Chr19:1055394–1060028 (+)8.174e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.869e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.857e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.966e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.966e-11
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)8.143e-12
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)8.143e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)3.194e-14