Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28957

Metabolite ID
P28957
Deionized mass
882.3863 Da
Average m/z
883.3925
Average RT
15.6478
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.859e-15
Glyma.06G312600 hypothetical protein NA 3Chr06:50110112–50120250 (+)7.54e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.613e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)9.978e-14
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)8.82e-16
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)4.377e-18
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)3.231e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.287e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)1.865e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)1.725e-11
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)5.361e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)2.007e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)4.069e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)7.522e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.264e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.172e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.574e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)6.471e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.895e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.461e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.555e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)5.599e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.086e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.031e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.891e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.915e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.891e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.891e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.833e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.646e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.098e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.859e-15
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)8.791e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.69e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)3.02e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.25e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.479e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)9.137e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.734e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.421e-12
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)6.445e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)2.463e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.82e-16
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.377e-18
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.359e-15
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)5.466e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)2.035e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.211e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)6.791e-11