Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28918

Metabolite ID
P28918
Deionized mass
610.3503 Da
Average m/z
611.3588
Average RT
15.6370
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.347e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.935e-18
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.627e-13
Glyma.16G161500 hypothetical protein NA 3Chr16:32076715–32092322 (-)6.119e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)6.263e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.548e-17
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)8.106e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.785e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.925e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.925e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.353e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.03e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.337e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.067e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.126e-14
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)6.765e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.437e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.071e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.071e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)7.552e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.335e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.132e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)9.781e-16
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)8.815e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)2.284e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)4.301e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)2.277e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.389e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.227e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.85e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)6.238e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)4.108e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.738e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.538e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.062e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.666e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.535e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.961e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.961e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.445e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.445e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.972e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)3.421e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.461e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.838e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.782e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.326e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.326e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.838e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.389e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.393e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.465e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.311e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.936e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.169e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.803e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.803e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.303e-16
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)2.675e-16
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)1.449e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.087e-13
Glyma.09G270300 hypothetical protein NA 1Chr09:48733890–48734902 (+)6.194e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.937e-15
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.074e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.272e-12
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)7.557e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.387e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.932e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.932e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.847e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.847e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.925e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.864e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.624e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.638e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.113e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.136e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.337e-15
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.77e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)5.433e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)5.433e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.165e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.4e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.165e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.165e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.458e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.185e-16
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.037e-14
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)7.498e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.821e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.821e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.512e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.072e-16
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.313e-11
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)3.898e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)4.886e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.065e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.412e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.543e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.193e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)8.915e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.304e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.365e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.086e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.086e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)1.558e-12
Glyma.16G161000 hypothetical protein NA 1Chr16:32027849–32031609 (-)1.173e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.621e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.943e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.539e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.342e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)6.157e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)3.37e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.612e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.171e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.555e-13
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.564e-12
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)9.753e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.028e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.131e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.699e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.699e-16
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.641e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.887e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)6.343e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.037e-12