Overview Annotation GWAS Evidence Associated genes

P28842

Metabolite ID
P28842
Deionized mass
270.0554 Da
Average m/z
271.0605
Average RT
15.6093
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
33
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

33 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 3Chr16:33359317–33362446 (+)1.577e-15
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.629e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.602e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)2.826e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.85e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.507e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.358e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.394e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.494e-14
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.945e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)8.58e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)8.58e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.878e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.608e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.608e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.131e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.904e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.146e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.921e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.449e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.921e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.921e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.632e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.493e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.629e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.973e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.405e-13
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)4.988e-14
Glyma.16G173100 hypothetical protein AT5G52920:PKP-BETA1:plastidic pyruvate kinase beta subunit 1 1Chr16:33368628–33375202 (-)2.865e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.129e-14
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)1.839e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.213e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.808e-14