Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28799

Metabolite ID
P28799
Deionized mass
338.0655 Da
Average m/z
339.0720
Average RT
15.5909
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.562e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.882e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)7.768e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.057e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.681e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.462e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.18e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.834e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.562e-12
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 2Chr20:34184591–34191923 (+)3.256e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.806e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.45e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.862e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.282e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.214e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.772e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.613e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.467e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.413e-17
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.237e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.539e-15
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.431e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)1.324e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.537e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.537e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.167e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.057e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.745e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.187e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.138e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.3e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.105e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.955e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.496e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.496e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.04e-15
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.716e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.327e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.328e-12
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)6.123e-12
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)6.123e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.38e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.881e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.985e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.815e-13