Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28778

Metabolite ID
P28778
Deionized mass
794.3327 Da
Average m/z
795.3409
Average RT
15.5850
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.006e-14
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 3Chr16:30388030–30390647 (-)4.59e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.745e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)9.291e-12
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)9.854e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.229e-15
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.702e-14
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)5.183e-12
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)5.75e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)6.096e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.499e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.611e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.971e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)4.537e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)4.537e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)1.616e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)6.765e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.427e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)9.534e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)1.731e-13
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)7.503e-12
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)1.784e-11
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 1Chr15:1970818–1978651 (-)5.144e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.305e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.191e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.305e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.305e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.964e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.793e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.006e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.114e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.547e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.399e-11
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)2.468e-11
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)2.468e-11
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)2.469e-11
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)2.469e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.822e-17
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)1.073e-11
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.292e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.077e-18
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)7.333e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.077e-18
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.702e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)7.539e-18
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)4.019e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)7.794e-11