Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28677

Metabolite ID
P28677
Deionized mass
242.1473 Da
Average m/z
485.3054
Average RT
15.5580
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)7.41e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 3Chr14:47664851–47670630 (+)1.154e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.581e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.673e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.322e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.427e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)6.177e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.797e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.888e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.252e-15
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.932e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.789e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.155e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.415e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)9.192e-12
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.793e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)6.743e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.648e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.314e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.314e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.407e-11
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)1.013e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.649e-13
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)4.417e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)9.424e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.998e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)1.133e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.593e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.813e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.813e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.28e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.567e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.158e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.106e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.248e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.439e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.183e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)5.981e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)5.981e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.13e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.872e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)7.725e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.14e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.759e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)3.034e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)3.034e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.649e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.177e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.797e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.797e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.797e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.797e-13
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.199e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.508e-12
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)7.41e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)7.41e-11
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)1.785e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.352e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.913e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.334e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.261e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.972e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.537e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.961e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.961e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.031e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.272e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.013e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.013e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.013e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.013e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.527e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.518e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.747e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.73e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.541e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.252e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)5.23e-12
Glyma.14G208600 hypothetical protein NA 1Chr14:47437358–47439597 (-)7.326e-11
Glyma.14G208700 hypothetical protein NA 1Chr14:47442866–47447625 (-)7.326e-11
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 1Chr14:47451105–47454596 (-)7.326e-11
Glyma.14G209000 hypothetical protein NA 1Chr14:47461788–47463395 (+)7.326e-11
Glyma.14G209200 hypothetical protein NA 1Chr14:47466917–47468975 (+)7.326e-11
Glyma.14G209600 hypothetical protein NA 1Chr14:47485565–47488948 (-)7.326e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)1.27e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.154e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.342e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.919e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.865e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)7.267e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)7.267e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)7.267e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.677e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.08e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.349e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.726e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.099e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.709e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)5.246e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.065e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.322e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.41e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.41e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.103e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.103e-11
Glyma.17G199600 hypothetical protein AT2G45330:emb1067:RNA 2'-phosphotransferase, Tpt1 / KptA family 1Chr17:31731965–31738073 (+)8.667e-11
Glyma.17G200400 hypothetical protein NA 1Chr17:31864566–31869426 (-)8.667e-11
Glyma.17G201000 hypothetical protein AT3G49600:UBP26:ubiquitin-specific protease 26 1Chr17:31946807–31956876 (-)8.667e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.24e-12
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)7.15e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.643e-15
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.427e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.537e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)1.825e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)2.421e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.257e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.257e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.462e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.064e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)7.727e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.28e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)8.973e-15