Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28557

Metabolite ID
P28557
Deionized mass
524.8064 Da
Average m/z
525.8120
Average RT
15.5289
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
83
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

83 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.353e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.448e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)5.386e-19
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.429e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.58e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.58e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)8.161e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.974e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.349e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.349e-12
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)8.224e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.205e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.035e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.804e-15
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.109e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.461e-14
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.238e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.669e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.99e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.857e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.857e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.857e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.707e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.707e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.924e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)6.283e-15
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)6.283e-15
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.753e-15
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.115e-14
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)6.599e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.812e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.571e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.187e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.238e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.919e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.136e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.275e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.275e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.275e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.275e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.541e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.231e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.241e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)3.829e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.727e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.547e-12
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)5.261e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)5.261e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.386e-19
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.384e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.353e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.539e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.947e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.946e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.58e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.867e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.44e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.037e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.645e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.308e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.756e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.042e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.53e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.051e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.051e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.561e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.881e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.398e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.997e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.758e-11
Glyma.17G006300 hypothetical protein AT4G16380:AT4G16380:Heavy metal transport/detoxification superfamily protein 1Chr17:586135–588091 (+)6.201e-11
Glyma.17G007000 hypothetical protein NA 1Chr17:615525–616722 (+)6.201e-11
Glyma.17G007300 hypothetical protein AT4G16440:NAR1:ferredoxin hydrogenase 1Chr17:621626–627757 (-)6.201e-11
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)7.358e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.324e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.324e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)8.271e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.44e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.591e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.401e-14
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)2.848e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.254e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.021e-14