Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28533

Metabolite ID
P28533
Deionized mass
988.4882 Da
Average m/z
989.4915
Average RT
15.5242
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
113
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

113 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029800 hypothetical protein NA 5Chr19:3724518–3729860 (-)1.454e-18
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.445e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.386e-14
Glyma.19G029600 hypothetical protein NA 4Chr19:3681517–3690884 (-)9.391e-21
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.672e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.672e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.672e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.501e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.515e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.515e-16
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.119e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.654e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)4.03e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.386e-14
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)1.137e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.152e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.151e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)2.866e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.88e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.304e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.878e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.926e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.585e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.919e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.737e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.737e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.143e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.931e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.931e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.931e-13
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)2.105e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.628e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.496e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.65e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.406e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.281e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.275e-12
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)6.927e-11
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)6.927e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)4.406e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)4.406e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)5.648e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.722e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.136e-12
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)4.486e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.52e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.198e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.672e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.672e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.672e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.102e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.672e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.672e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.748e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.358e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.025e-14
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.025e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.293e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.516e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.552e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.552e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.552e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.552e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.467e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.468e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.689e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.502e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.697e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.697e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.515e-16
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.006e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)5.734e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.979e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.186e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.465e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.073e-14
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.107e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.371e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.371e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.866e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)6.895e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.532e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.717e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.359e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.725e-11
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)5.576e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.665e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.368e-15
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.988e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.74e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.629e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.888e-15
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.648e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.487e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.219e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)3.089e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.67e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)9.275e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.187e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)8.853e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.418e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.467e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.467e-13
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)1.826e-14
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.499e-15
Glyma.19G029500 hypothetical protein NA 1Chr19:3669589–3673886 (-)2.124e-12
Glyma.19G029900 hypothetical protein NA 1Chr19:3729213–3729434 (+)2.124e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)1.341e-14
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)1.341e-14
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)1.266e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.215e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.016e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)3.17e-13