Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28473

Metabolite ID
P28473
Deionized mass
868.3688 Da
Average m/z
869.3792
Average RT
15.5094
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)9.602e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.698e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.025e-12
Glyma.16G140600 hypothetical protein NA 2Chr16:29836830–29839178 (+)7.354e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.043e-15
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.302e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.634e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)4.517e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)2.244e-13
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)1.975e-12
Glyma.03G017500 hypothetical protein NA 1Chr03:1761083–1762800 (+)3.583e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.11e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.084e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.503e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.49e-12
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)3.481e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)3.481e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)4.002e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)4.002e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)8.488e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)5.239e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)2.547e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.671e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.671e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.607e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.043e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)1.787e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.518e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.518e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.752e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.135e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.698e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.565e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.543e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.676e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.543e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.543e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.107e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.025e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)3.536e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.364e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.155e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.193e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.199e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.699e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.199e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.043e-15
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.639e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)6.477e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.302e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)2.248e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.568e-13
Glyma.18G264000 hypothetical protein AT3G29270:AT3G29270:RING/U-box superfamily protein 1Chr18:54933280–54938718 (+)2.95e-11
Glyma.18G264700 hypothetical protein AT5G15470:GAUT14:galacturonosyltransferase 14__AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr18:54973306–54979374 (-)7.181e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)3.098e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)1.61e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.081e-17
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)8.469e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.799e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)5.564e-13
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)1.474e-11
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)7.961e-11