Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28286

Metabolite ID
P28286
Deionized mass
234.0876 Da
Average m/z
235.0953
Average RT
15.4573
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.865e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.687e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.919e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.919e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.919e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.609e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.639e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.816e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.816e-13
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)9.656e-11
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)9.656e-11
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)9.656e-11
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)9.656e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.888e-17
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)1.023e-11
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)7.884e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.96e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.479e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.262e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.022e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.022e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.022e-11
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)4.493e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.493e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.389e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.735e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.279e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.248e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.726e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)3.457e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.243e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)5.317e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)5.317e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.435e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)4.836e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.112e-14
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)1.055e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.92e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.92e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.919e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.92e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.92e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.406e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.529e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.326e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.326e-12
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)8.987e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.639e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.399e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.399e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.816e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.269e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.984e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.224e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.224e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.204e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.746e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.045e-12
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)9.619e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.971e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.32e-11
Glyma.16G179300 hypothetical protein NA 1Chr16:33992892–33995532 (+)7.203e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.832e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.321e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.717e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.734e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.614e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.865e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)4.142e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)8.564e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.064e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.064e-11