Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28280

Metabolite ID
P28280
Deionized mass
913.3376 Da
Average m/z
914.3454
Average RT
15.4548
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)6.174e-13
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 2Chr06:18712866–18716868 (+)1.397e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.115e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.498e-13
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)2.934e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.904e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.99e-14
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)5.877e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.174e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.175e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.084e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.032e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.268e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.651e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.651e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.651e-11
Glyma.05G222500 hypothetical protein AT2G19600:KEA4:K+ efflux antiporter 4 1Chr05:40179950–40188580 (+)7.327e-11
Glyma.05G222900 hypothetical protein AT4G29490:AT4G29490:Metallopeptidase M24 family protein 1Chr05:40226295–40233649 (-)5.833e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.736e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.783e-16
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.244e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.926e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.203e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.203e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.203e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.203e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)1.118e-12
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)1.118e-12
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)1.118e-12
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)1.118e-12
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)1.118e-12
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)1.118e-12
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)1.118e-12
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)1.118e-12
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)1.118e-12
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)1.118e-12
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)1.118e-12
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)1.118e-12
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)1.118e-12
Glyma.12G035600 hypothetical protein AT5G45600:GAS41:YEATS family protein 1Chr12:2597690–2600977 (+)8.948e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.498e-13
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)2.934e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.088e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)1.851e-13
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)3.155e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.424e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)3.734e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.649e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.38e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.458e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.493e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.332e-14
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)5.497e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)3.217e-11