Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28213

Metabolite ID
P28213
Deionized mass
517.0958 Da
Average m/z
518.1003
Average RT
15.4296
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.535e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)5.242e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.129e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.869e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.869e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.945e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)3.615e-11
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)8.715e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.494e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.009e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.94e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.113e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.39e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.376e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.755e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.048e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.328e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.328e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.069e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.069e-14
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)5.184e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.661e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.533e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.661e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.661e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.533e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.991e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.535e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.535e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.056e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.394e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.056e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.932e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)5.781e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)6.696e-12
Glyma.12G059300 hypothetical protein NA 1Chr12:4289989–4292215 (-)1.121e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.695e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.695e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.481e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.349e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.509e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.509e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.042e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.869e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.87e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.99e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.555e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.945e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.388e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.893e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.654e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.654e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.137e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.854e-11
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)1.539e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)1.539e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.51e-20
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)6.093e-13
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)7.952e-11
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)7.952e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.216e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.216e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.286e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.602e-13