Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28200

Metabolite ID
P28200
Deionized mass
812.2581 Da
Average m/z
813.2625
Average RT
15.4265
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 4Chr10:48805999–48811533 (-)1.481e-17
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.214e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.385e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.049e-11
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 2Chr07:8723740–8734056 (-)5.897e-15
Glyma.07G095400 hypothetical protein NA 2Chr07:8914725–8920132 (+)1.528e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.405e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.412e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.412e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.821e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.849e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.259e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)3.422e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.459e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.467e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.434e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.928e-12
Glyma.05G148800 hypothetical protein AT1G24260:SEP3:K-box region and MADS-box transcription factor family protein 1Chr05:34293639–34302134 (-)1.587e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.102e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.551e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.274e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.772e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.645e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.645e-14
Glyma.06G126300 hypothetical protein NA 1Chr06:10331312–10341252 (-)3.649e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)9.068e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.923e-20
Glyma.06G126700 hypothetical protein AT5G53120:SPDS3:spermidine synthase 3 1Chr06:10384771–10389578 (-)2.383e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.244e-17
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.899e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.037e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)2.903e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)9.56e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)1.761e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.942e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.942e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)1.412e-12
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)2.142e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.322e-14
Glyma.07G095000 hypothetical protein NA 1Chr07:8843665–8855430 (+)8.646e-14
Glyma.07G095900 hypothetical protein AT1G18390:AT1G18390:Serine/Threonine kinase family catalytic domain protein 1Chr07:8976589–8988142 (-)6.42e-13
Glyma.07G096100 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr07:9005577–9010088 (+)2.312e-12
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)5.026e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.278e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)2.915e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.764e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.982e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.782e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.248e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.513e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.462e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)6.698e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.213e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.825e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.185e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.185e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.412e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.618e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.624e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.461e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.552e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.454e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.918e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.648e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.127e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.247e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.168e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.737e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.696e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.494e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.303e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.338e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.385e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)3.849e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.365e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)9.887e-11