Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28167

Metabolite ID
P28167
Deionized mass
450.2232 Da
Average m/z
451.2282
Average RT
15.4198
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.26e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.635e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.212e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.801e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.801e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.685e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.26e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.257e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.257e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.288e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.685e-16
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)3.466e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)8.407e-13
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)1.11e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.841e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.093e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.652e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.652e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.652e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.956e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.033e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.424e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)8.383e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.261e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.751e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.135e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.127e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.39e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.54e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.648e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.649e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.212e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.999e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.999e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.801e-12
Glyma.14G048200 hypothetical protein NA 1Chr14:3737773–3746209 (-)7.733e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.758e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.541e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.28e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.124e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.966e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.463e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.862e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.108e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.193e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.193e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)6.141e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.685e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.005e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.986e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.987e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.384e-11