Overview Annotation GWAS Evidence Associated genes

P28153

Metabolite ID
P28153
Deionized mass
415.2032 Da
Average m/z
416.2104
Average RT
15.4177
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.276e-13
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)7.544e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.771e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)1.005e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.198e-15
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)4.358e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)2.028e-11
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)4.838e-11
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)9.25e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)4.763e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.8e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.115e-13
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)3.194e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.701e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.701e-14
Glyma.16G018000 hypothetical protein NA 2Chr16:1601748–1607341 (-)1.555e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.941e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.287e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.318e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.318e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.241e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.869e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.686e-12
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)7.132e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)4.838e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)4.838e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)4.838e-11
Glyma.03G006000 hypothetical protein AT1G08680:ZIGA4:ARF GAP-like zinc finger-containing protein ZIGA4 1Chr03:564616–574984 (+)2.283e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.758e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.468e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.402e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.332e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.503e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.186e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.899e-17
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.525e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.525e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.343e-19
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.844e-18
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.844e-18
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.844e-18
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)4.763e-11
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)4.763e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.222e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.17e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.867e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.337e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.612e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.29e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.004e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.004e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.356e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.6e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.36e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)5.828e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)5.828e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.67e-16
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.536e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.023e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.328e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.115e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.115e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.115e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.115e-13
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)5.482e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.515e-11
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)2.639e-12
Glyma.08G150700 hypothetical protein AT2G44500:AT2G44500:O-fucosyltransferase family protein 1Chr08:11603469–11607610 (+)1.813e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.073e-14
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.073e-14
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.294e-11
Glyma.09G038800 hypothetical protein NA 1Chr09:3251349–3254283 (+)9.64e-11
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)1.966e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.527e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)1.442e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)4.504e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.17e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.706e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)7.769e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.247e-11
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)7.809e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)8.441e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.568e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.707e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.351e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.351e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.351e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.351e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)7.647e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)6.059e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.79e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.79e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.826e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.826e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.729e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)1.501e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)1.501e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)1.501e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.771e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.863e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.697e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.697e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.701e-14
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)6.743e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.714e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.714e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.714e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.532e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.404e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.175e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)4.683e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.652e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.056e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.056e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.029e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)7.351e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.024e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.304e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.378e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.35e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.139e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)4.556e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.28e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.697e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.099e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.923e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.258e-11
Glyma.17G145900 hypothetical protein AT4G16820:PLA-I{beta]2:alpha/beta-Hydrolases superfamily protein 1Chr17:12027849–12029726 (+)7.922e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.198e-15
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.7e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.56e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)2.135e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.997e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.997e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.598e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.588e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.328e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.901e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.035e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.219e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.062e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)6.083e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)2.211e-12