Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28051

Metabolite ID
P28051
Deionized mass
523.1304 Da
Average m/z
524.1351
Average RT
15.3891
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.842e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.144e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)1.962e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.787e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)4.961e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.51e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.584e-12
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 2Chr20:34796301–34808587 (+)5.827e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.912e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.519e-11
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)3.519e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.574e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.614e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.614e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)7.183e-12
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)2.11e-15
Glyma.06G303300 hypothetical protein NA 1Chr06:49275774–49276891 (+)3.487e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)7.795e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.787e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.51e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.51e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.51e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.51e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.371e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.371e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.624e-15
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)2.268e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.584e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)8.796e-14
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.666e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.144e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.255e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.255e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.024e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.024e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.842e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)4.673e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)9.663e-12
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)5.827e-12
Glyma.20G106200 hypothetical protein NA 1Chr20:34862155–34865242 (+)1.456e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.352e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.393e-12