Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27888

Metabolite ID
P27888
Deionized mass
377.1543 Da
Average m/z
378.1613
Average RT
15.3350
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.349e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)6.995e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.641e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.291e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.291e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.291e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.092e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.349e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.83e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 2Chr20:35468911–35474203 (+)1.095e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.745e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)2.804e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)5.617e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)5.617e-11
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)2.733e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.279e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.669e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.119e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.962e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.291e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.323e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.43e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.068e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.49e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.641e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.641e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.641e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.641e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.228e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.169e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)4.403e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)7.055e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.705e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.528e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.291e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.291e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.291e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.291e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.291e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.18e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.944e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.944e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.944e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.944e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.404e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.083e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.813e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.11e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.83e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.83e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.83e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.83e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.798e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.591e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.092e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.788e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.788e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.427e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)9.647e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.031e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.699e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.104e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.271e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.271e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)8.008e-11
Glyma.18G213500 hypothetical protein AT2G38550:AT2G38550:Transmembrane proteins 14C 1Chr18:50044567–50050213 (-)9.051e-12
Glyma.18G226200 hypothetical protein AT4G00750:AT4G00750:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr18:51454812–51459765 (-)4.01e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.117e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.277e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.277e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.762e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.195e-11
Glyma.20G096200 hypothetical protein NA 1Chr20:33923470–33925550 (-)7.117e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)5.132e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.794e-13
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.176e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.348e-14
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)6.272e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)8.042e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.319e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.184e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)8.432e-12