Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27806

Metabolite ID
P27806
Deionized mass
459.1623 Da
Average m/z
460.1680
Average RT
15.3064
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
111
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

111 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.29e-11
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.891e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.021e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.256e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.432e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.144e-12
Glyma.01G030500 hypothetical protein NA 2Chr01:3189212–3200277 (+)8.041e-12
Glyma.01G034300 hypothetical protein NA 2Chr01:3573149–3579461 (-)8.063e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)4.445e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.121e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.121e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.121e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.68e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.586e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.586e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.527e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.163e-12
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)2.816e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.713e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.242e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.041e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.021e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)8.664e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.731e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.934e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.999e-16
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.704e-12
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)8.676e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.28e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.919e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.563e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.092e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.726e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.766e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.766e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.215e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.7e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.7e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.7e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.96e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.102e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.316e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.641e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.29e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.29e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.29e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)1.127e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.411e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.357e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.411e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.411e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.357e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.8e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.355e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.353e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.827e-11
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr09:1518046–1520807 (+)4.559e-13
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)4.057e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.121e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.121e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.121e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.121e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.121e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.781e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.781e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.781e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.781e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.047e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.091e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.104e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.104e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.338e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.338e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.359e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.359e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.128e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.586e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.586e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.239e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.076e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.841e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.079e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.527e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.163e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.161e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.794e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.161e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.161e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.61e-13
Glyma.15G124200 hypothetical protein AT1G50500:HIT1:Membrane trafficking VPS53 family protein 1Chr15:9861709–9873220 (+)7.042e-11
Glyma.15G124300 hypothetical protein NA 1Chr15:9875069–9875810 (+)7.042e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.816e-14
Glyma.16G051600 hypothetical protein AT5G41100:AT5G41100:hydroxyproline-rich glycoprotein family protein__AT3G26910:AT3G26910:hydroxyproline-rich glycoprote… 1Chr16:4963950–4972993 (-)3.306e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.29e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.999e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.901e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.45e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.256e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.256e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.786e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.261e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.042e-14
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.159e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)4.936e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)9.738e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.144e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.433e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.433e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.79e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.79e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)7.708e-16