Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27758

Metabolite ID
P27758
Deionized mass
242.1512 Da
Average m/z
243.1571
Average RT
15.2950
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
25
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

25 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)9.671e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)9.671e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)9.671e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)8.206e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.318e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.534e-11
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)9.868e-11
Glyma.08G104500 hypothetical protein AT1G27385:AT1G27385:phosphoribosylformylglycinamidine synthase 1Chr08:8041175–8044478 (+)1.291e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)2.675e-12
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)2.195e-13
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)2.195e-13
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)5.372e-15
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)4.229e-14
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)4.331e-12
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)5.372e-15
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)1.238e-14
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)4.498e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.697e-11
Glyma.09G160600 hypothetical protein NA 1Chr09:38477864–38480357 (-)6.24e-11
Glyma.09G160900 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr09:38496450–38501749 (+)6.24e-11
Glyma.09G161000 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr09:38503097–38506814 (+)6.24e-11
Glyma.09G161200 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr09:38542829–38545625 (+)6.24e-11
Glyma.09G161300 hypothetical protein AT5G42790:PAF1:proteasome alpha subunit F1 1Chr09:38550513–38553809 (-)6.24e-11
Glyma.09G161400 hypothetical protein NA 1Chr09:38569947–38575128 (+)6.24e-11
Glyma.12G095500 hypothetical protein AT3G44150:AT3G44150:Expp1 protein 1Chr12:8023570–8027770 (-)5.943e-11