Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27756

Metabolite ID
P27756
Deionized mass
588.1946 Da
Average m/z
589.1972
Average RT
15.2948
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.055e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.473e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.973e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)3.526e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.852e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)7.313e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)7.313e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.163e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.672e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.785e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)6.138e-13
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)5.843e-13
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)9.598e-11
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)1.706e-11
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)7.623e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)8.168e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.19e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.969e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.33e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.01e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.474e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.504e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.716e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.716e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)7.667e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.57e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.57e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.411e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.411e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.557e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)5.313e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.684e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.973e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.973e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.978e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.843e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.898e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.034e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.324e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.775e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.218e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.625e-13