Overview Annotation GWAS Evidence Associated genes

P27540

Metabolite ID
P27540
Deionized mass
393.2469 Da
Average m/z
394.2532
Average RT
15.2466
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)2.511e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.661e-15
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)7.374e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.838e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.154e-13
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)1.33e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.702e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.667e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)8.787e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.045e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.684e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.664e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.664e-15
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)3.497e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.649e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.397e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.661e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.074e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.796e-13
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)7.385e-12
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 2Chr20:45490419–45496014 (+)8.04e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.114e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.113e-13
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.352e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.942e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.619e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)3.436e-12
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)2.053e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.011e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.464e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)4.936e-12
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)1.78e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.292e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.785e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.053e-11
Glyma.04G097900 hypothetical protein AT5G65380:AT5G65380:MATE efflux family protein 1Chr04:8857667–8865249 (+)2.275e-11
Glyma.04G098100 hypothetical protein AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein 1Chr04:8887523–8888545 (-)6.775e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.119e-11
Glyma.04G158400 hypothetical protein AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein 1Chr04:38560905–38571145 (-)3.879e-11
Glyma.04G160700 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr04:39818871–39825716 (+)3.879e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.509e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.645e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.645e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.645e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.217e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.009e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.988e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.513e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.959e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.8e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.017e-13
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)1.599e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)2.808e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)7.837e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.171e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.884e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.384e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.384e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.949e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.398e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.398e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.602e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.564e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.428e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.787e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.787e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.384e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.787e-13
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.026e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.175e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.49e-14
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.633e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.61e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.314e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.092e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.092e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.017e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.49e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.49e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.49e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.49e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)7.276e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.624e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.624e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.624e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.997e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.997e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.438e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.417e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.937e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.809e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.809e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)2.325e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)2.325e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)2.325e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.684e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.759e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.759e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.664e-15
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)7.366e-12
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)6.002e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.074e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)6.283e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.905e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.986e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.034e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.422e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.867e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.422e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.422e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.279e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)1.941e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.502e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.838e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.838e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.838e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.838e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)2.034e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.189e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.334e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)9.587e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.154e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.154e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.887e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.937e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.645e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.69e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.69e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.928e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.29e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.29e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)8.215e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.451e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)6.274e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)2.473e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)3.863e-14
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 1Chr20:45387265–45391879 (-)7.912e-13
Glyma.20G220900 GER12 germin-like protein AT5G39110:AT5G39110:RmlC-like cupins superfamily protein__AT5G39160:AT5G39160:RmlC-like cupins superfamily protein__AT5… 1Chr20:45587617–45588678 (+)1.479e-11
Glyma.20G221200 hypothetical protein NA 1Chr20:45616970–45619607 (-)1.479e-11