Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27043

Metabolite ID
P27043
Deionized mass
134.0430 Da
Average m/z
135.0499
Average RT
15.0886
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
153
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

153 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 5Chr04:7187985–7192897 (+)6.653e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)2.725e-15
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.287e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.928e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.58e-14
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.019e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.738e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.738e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)2.925e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.701e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.533e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.424e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.209e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.209e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.417e-13
Glyma.02G128900 hypothetical protein AT1G26170:AT1G26170:ARM repeat superfamily protein 1Chr02:13160184–13178043 (+)1.144e-11
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)2.031e-12
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)2.031e-12
Glyma.02G130400 CHS10 chalcone synthase 10 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr02:13399253–13401493 (+)4.762e-11
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)2.031e-12
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)2.031e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.938e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.675e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.284e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.968e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.986e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)5.538e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)8.562e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)2.058e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.797e-15
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.417e-15
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)6.979e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.39e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.713e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.026e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.337e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.337e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.337e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.18e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.539e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.076e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.054e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.726e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.726e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.726e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.726e-13
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)6.247e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.19e-21
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.634e-25
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.179e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.524e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.524e-15
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)7.896e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.778e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.214e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.778e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.778e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.214e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.097e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)9.175e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)9.175e-11
Glyma.06G304200 hypothetical protein AT1G04910:AT1G04910:O-fucosyltransferase family protein 1Chr06:49352555–49358511 (-)6.507e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.654e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.134e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.537e-16
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.751e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.331e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)5.702e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)2.643e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.643e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.694e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.738e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.738e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.405e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.738e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)7.955e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)7.955e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.053e-14
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.667e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.2e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.541e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.762e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.762e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.272e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.121e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.121e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.121e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.121e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.299e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.4e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.705e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.315e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.782e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.782e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.079e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.079e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.4e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.4e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.493e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.278e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.196e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.196e-12
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.451e-12
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)7.265e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.411e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.891e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.891e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.891e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.757e-13
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)5.531e-14
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.075e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.45e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.781e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.45e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.45e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.273e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.953e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.701e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.928e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.928e-14
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.928e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.928e-14
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.844e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.344e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.532e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.58e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.58e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.386e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.81e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.923e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.07e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.538e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.538e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.894e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.894e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)5.35e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)2.673e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)2.837e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)3.477e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.829e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.075e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)4.415e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.004e-12
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.755e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)6.756e-13
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.093e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.807e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.807e-12
Glyma.19G118500 hypothetical protein NA 1Chr19:37592389–37594845 (-)6.602e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.24e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.752e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.032e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.31e-12