Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27019

Metabolite ID
P27019
Deionized mass
597.3069 Da
Average m/z
598.3151
Average RT
15.0860
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)5.027e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.753e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.433e-14
Glyma.07G040200 hypothetical protein NA 2Chr07:3324393–3329481 (-)3.024e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)2.686e-17
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.504e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.429e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.417e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.252e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.522e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.41e-15
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)8.078e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.684e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.934e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.506e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.159e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.159e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.217e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.259e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.966e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.197e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.711e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)6.865e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.949e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.962e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.962e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.949e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.862e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.862e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.862e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.386e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.815e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.078e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.084e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.084e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.084e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.202e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.202e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.211e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.922e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.211e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.211e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.922e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)8.12e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.123e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)8.462e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.904e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.95e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.465e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.466e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.537e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.326e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.048e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.895e-17
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)1.032e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)4.53e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.551e-18
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.551e-18
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.551e-18
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.551e-18
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.101e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.062e-18
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.101e-12
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)8.709e-16
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.487e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.143e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.615e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.615e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.615e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.615e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)8.137e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.05e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.05e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.615e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.429e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.834e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.125e-11
Glyma.13G149800 hypothetical protein AT2G36580:AT2G36580:Pyruvate kinase family protein 1Chr13:26329040–26335075 (-)3.031e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)1.158e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.717e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.024e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.849e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.305e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.252e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.522e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.483e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.677e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.483e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.483e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.554e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.464e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.471e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.753e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.753e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.753e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.753e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.472e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.433e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.433e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.96e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.102e-13
Glyma.16G120200 hypothetical protein AT4G35730:AT4G35730:Regulator of Vps4 activity in the MVB pathway protein 1Chr16:26823772–26828068 (+)2.685e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.487e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.602e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.992e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.295e-11
Glyma.17G250700 hypothetical protein AT1G75210:AT1G75210:HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 1Chr17:40550521–40557680 (+)6.302e-11
Glyma.17G250800 hypothetical protein NA 1Chr17:40558554–40564000 (-)6.302e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.756e-11
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)2.756e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.487e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.849e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.849e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.174e-11