Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26612

Metabolite ID
P26612
Deionized mass
563.1473 Da
Average m/z
564.1552
Average RT
15.0207
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 4Chr16:30388030–30390647 (-)8.403e-15
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)2.903e-17
Glyma.16G137600 hypothetical protein NA 3Chr16:29468438–29472890 (-)3.584e-13
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 3Chr16:30434508–30475458 (-)6.16e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)8.157e-26
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)2.792e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)2.753e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.254e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.254e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.559e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)1.031e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.28e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.175e-12
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)4.741e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 2Chr16:30086178–30091466 (-)1.13e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)4.681e-20
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)8.157e-26
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)4.53e-17
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)4.564e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.339e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.34e-13
Glyma.01G001300 hypothetical protein AT2G07050:CAS1:cycloartenol synthase 1 1Chr01:227021–237987 (-)1.4e-11
Glyma.01G031900 hypothetical protein AT1G23870:TPS9:trehalose-phosphatase/synthase 9 1Chr01:3342396–3347771 (+)6.749e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)8.122e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)2.503e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.725e-11
Glyma.03G027700 hypothetical protein AT3G13440:AT3G13440:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:3035702–3042238 (-)6.21e-11
Glyma.03G027800 hypothetical protein AT2G22410:SLO1:SLOW GROWTH 1 1Chr03:3038542–3039642 (-)6.21e-11
Glyma.03G027900 hypothetical protein AT2G45270:GCP1:glycoprotease 1 1Chr03:3048805–3061575 (-)1.217e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)9.327e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.945e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)2.474e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.277e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.239e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.453e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.954e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.191e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.139e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.499e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)8.821e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)8.821e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.125e-12
Glyma.08G311500 hypothetical protein NA 1Chr08:43083381–43085732 (+)8.919e-11
Glyma.08G311600 hypothetical protein NA 1Chr08:43086708–43088564 (+)8e-11
Glyma.09G099500 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein 1Chr09:18099034–18105167 (+)2.283e-11
Glyma.09G099600 hypothetical protein NA 1Chr09:18100113–18100745 (+)2.283e-11
Glyma.09G099800 hypothetical protein NA 1Chr09:18134075–18134470 (-)2.283e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)4.461e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.956e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.04e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.178e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.614e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)3.365e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.742e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.742e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.146e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.146e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.154e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.154e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.995e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.605e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.605e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.663e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.237e-16
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.456e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.456e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.254e-12
Glyma.13G166300 hypothetical protein NA 1Chr13:28110251–28113628 (-)4.833e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.205e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.559e-12
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)2.082e-11
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)1.019e-11
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)6.889e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)1.327e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.28e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.994e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.851e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.994e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.994e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.956e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.704e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.175e-12
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)2.365e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)8.012e-13
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)3.362e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)3.362e-11
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)3.345e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.711e-14
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)2.711e-13
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)2.711e-13
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)1.494e-13
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)1.494e-13
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)1.494e-13
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)1.494e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.003e-20
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)1.441e-12
Glyma.16G144400 hypothetical protein NA 1Chr16:30478942–30480766 (+)7.46e-11
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)7.675e-13
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)3.469e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.287e-15
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)2.081e-13
Glyma.16G145400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr16:30624348–30627475 (+)8.666e-12
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)5.358e-14
Glyma.16G145900 hypothetical protein NA 1Chr16:30681265–30689398 (-)3.396e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.53e-17
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.643e-26
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)6.34e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.816e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.509e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)4.515e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.34e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.436e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.493e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.306e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.947e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.947e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.529e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.104e-11
Glyma.20G114300 hypothetical protein AT3G25840:AT3G25840:Protein kinase superfamily protein 1Chr20:35602598–35610724 (+)7.952e-11