Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26284

Metabolite ID
P26284
Deionized mass
590.1892 Da
Average m/z
591.1976
Average RT
14.9297
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)2.743e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.845e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)2.512e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.512e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)2.62e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.586e-11
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)8.02e-15
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 2Chr09:6509441–6524102 (+)7.467e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.484e-12
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)3.142e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.1e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.198e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.971e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.972e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.34e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.987e-11
Glyma.18G240600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 2Chr18:52922157–52933250 (-)8.562e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)8.968e-13
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.468e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.228e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.023e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.657e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.453e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.453e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.453e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.453e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.453e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.453e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.453e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.677e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.677e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.227e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.465e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.879e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.023e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.097e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.399e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.162e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.942e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.942e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.565e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.415e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.415e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.415e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.758e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.36e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.64e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.845e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.845e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)3.924e-11
Glyma.07G010700 hypothetical protein AT3G13730:CYP90D1:cytochrome P450, family 90, subfamily D, polypeptide 1 1Chr07:817488–822276 (+)3.924e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.524e-13
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.524e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.776e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.997e-13
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)2.022e-12
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)5.006e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.611e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.586e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.586e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.003e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.883e-12
Glyma.09G067600 hypothetical protein NA 1Chr09:6804057–6804365 (+)2.755e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)1.051e-13
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)1.121e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)4.664e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.598e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.098e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.542e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.307e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.307e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.307e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.307e-14
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)5.495e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.293e-15
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)5.495e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.197e-13
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.973e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.812e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.812e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.812e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.968e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.968e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.405e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.405e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.142e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.142e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.144e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.198e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.829e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.046e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.873e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.873e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.971e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.685e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.685e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.685e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.608e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.484e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.531e-16
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)1.741e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)1.741e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.05e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)1.62e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)1.537e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.129e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.556e-13
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)7.372e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.025e-16
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)4.169e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.665e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)8.245e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)4.199e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.844e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.087e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.884e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)6.78e-13
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.016e-12
Glyma.16G208300 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36786114–36787686 (+)5.522e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)1.748e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.412e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.568e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)3.707e-11
Glyma.18G247000 hypothetical protein NA 1Chr18:53433846–53444848 (-)3.146e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)9.836e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.968e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.743e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.743e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.803e-14