Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26120

Metabolite ID
P26120
Deionized mass
537.3455 Da
Average m/z
538.3528
Average RT
14.8806
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.23e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.692e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)2.23e-15
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.967e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)4.037e-15
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 2Chr06:50586679–50589765 (+)3.993e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.674e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.864e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.539e-18
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.273e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.845e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.645e-13
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)5.797e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.019e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.362e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.362e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)9.311e-15
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.569e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.557e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.848e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.448e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)9.578e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.444e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.319e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.348e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.854e-14
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.143e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.7e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.58e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.855e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.058e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.058e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.54e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.116e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.116e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.116e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)5.009e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.569e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)6.291e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.061e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.061e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.532e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.532e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.532e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)5.86e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)5.86e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)9.312e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.23e-15
Glyma.06G313600 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr06:50219160–50226659 (-)8.734e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.95e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.964e-13
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)9.887e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.226e-13
Glyma.08G099800 hypothetical protein NA 1Chr08:7636648–7639681 (+)5.427e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)4.156e-13
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.092e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.349e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.69e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.567e-14
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.949e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.949e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.264e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)1.971e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.56e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.448e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.815e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.815e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.539e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.539e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.31e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)4.283e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.859e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.859e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.743e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.313e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.539e-18
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.585e-15
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.957e-17
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.695e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.463e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.037e-18
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.144e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.614e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.354e-16
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)5.782e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)5.066e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)5.066e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)4.086e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)4.086e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)4.086e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.041e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.845e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.645e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.509e-12
Glyma.15G012000 hypothetical protein NA 1Chr15:936268–944374 (+)5.192e-11
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 1Chr15:1970818–1978651 (-)6.235e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.784e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.209e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.784e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.784e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.95e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.379e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.72e-15
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.677e-13
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.064e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.987e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.482e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.933e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.212e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.154e-14
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.071e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)2.729e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.29e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)7.11e-12
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)7.11e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.105e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.691e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)8.836e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)8.836e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)8e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.422e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.09e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.09e-14