Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25958

Metabolite ID
P25958
Deionized mass
296.1612 Da
Average m/z
297.1670
Average RT
14.8215
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G301000 hypothetical protein NA 2Chr06:49001317–49005605 (+)2.601e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.738e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)9.609e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.311e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.583e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.815e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.667e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.938e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.435e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.5e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)4.458e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.359e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.036e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.015e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.674e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.165e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.82e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.82e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.548e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.475e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.475e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.475e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)7.65e-13
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)4.186e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.437e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.437e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.437e-15
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.75e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)8.131e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.07e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.897e-13
Glyma.08G099800 hypothetical protein NA 1Chr08:7636648–7639681 (+)3.694e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.628e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.472e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)5.235e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.355e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.321e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.66e-17
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)3.368e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.44e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.44e-12
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.991e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.44e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.44e-12
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)3.315e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)3.314e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)3.314e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.311e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)9.509e-13
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)1.423e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.072e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.486e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.486e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.806e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.806e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.489e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.489e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.54e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.26e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.583e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.845e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.644e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)9.223e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.38e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.815e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.667e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.408e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.7e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.553e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.731e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)1.651e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.467e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.485e-11
Glyma.16G213300 hypothetical protein AT1G34130:STT3B:staurosporin and temperature sensitive 3-like b 1Chr16:37138811–37144846 (+)4.188e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)4.788e-11
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)7.928e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.147e-12
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)6.151e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.345e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.297e-12